NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307275_1035833

Scaffold Ga0307275_1035833


Overview

Basic Information
Taxon OID3300031609 Open in IMG/M
Scaffold IDGa0307275_1035833 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater viral communities from high-CO2 subsurface aquifer at Crystal Geyser, Utah, USA - CG16 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Subsurface Water → Freshwater Rna Viral Communities From High-co2 Subsurface Aquifer At Crystal Geyser, Utah, Usa

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002857Metagenome / Metatranscriptome525Y
F068436Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0307275_10358331F068436N/AIQINKTTMENKKKNAENAWEKGIVNEIYEEIEKKNREYEKRMNLIEAIFN
Ga0307275_10358332F002857N/AMENKKRIWGTTQMDEAYDEMIRMEKEKQNGSVFKNDEKNDKKEMKASMKFLSDKNFIERISLRDGMKRKFKLVKDEATEIIGFDGNAKQGITYTVMENGKLGSFFTTSLKCISELSKFRKDDVFEIELRTKKMGNTVVCFHAIK

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