NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307275_1023741

Scaffold Ga0307275_1023741


Overview

Basic Information
Taxon OID3300031609 Open in IMG/M
Scaffold IDGa0307275_1023741 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater viral communities from high-CO2 subsurface aquifer at Crystal Geyser, Utah, USA - CG16 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)791
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Subsurface Water → Freshwater Rna Viral Communities From High-co2 Subsurface Aquifer At Crystal Geyser, Utah, Usa

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003801Metagenome / Metatranscriptome467Y

Sequences

Protein IDFamilyRBSSequence
Ga0307275_10237412F003801N/AMENTKESVYIFSVPIDKIKKHILNRSIAKINCIIYKTNKIRNMNYEFDRQMNIASPPKTDAEQEKKAKKIDNFQREIEKRWGEVRADKEEIRTTMTILSELSKIRRKYIGVAEEEQMSWADIRRDIQNKMKNSFCM

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