NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307999_1096127

Scaffold Ga0307999_1096127


Overview

Basic Information
Taxon OID3300031608 Open in IMG/M
Scaffold IDGa0307999_1096127 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)686
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5735Long. (o)77.9231Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018271Metagenome236Y
F053569Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0307999_10961271F053569AGCAGGMTDIYLEVLSDLHKLWEYSNPYCKKLNAEKHSAYKKA
Ga0307999_10961272F018271N/ANSLTNHCHVTAQINAHTDDYTPPVDGVFDECSPLADIYATLMLEREVTFQAGWNFEPTTYTAFDILLDRINENASTSDLAASIFAAALFSENNGLTATDLAQDSDFETWVYDFFKYLQNSKPTPFTKPNLEFLNVRGEQXTFQDIR

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