Scaffold Ga0307999_1047695

Overview

Basic Information

• Taxon OID: 3300031608
• Scaffold ID: Ga0307999_1047695
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1019
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → unclassified Pelagivirus → Pelagibacter phage HTVC031P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5735
  • Long. (^o): 77.9231
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072524	Metagenome	121	Y
F080519	Metagenome / Metatranscriptome	115	Y
F094529	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307999_10476951	F094529	GGAG	MRNQIDQKSLYVERSGDKEIYYSYNTTVAIRTPLETYVSENVWSVTTAKHLN
Ga0307999_10476953	F080519	GGAGG	MKQCKICDDKPNEIWSQCGYTYICKPCMEIHHDTNHEKIGTGVYPNNYIPSDYYTLINNK
Ga0307999_10476954	F072524	GGAGG	MSIKMSVNGKAMEYFTIKVNHGFGVEDLAYLVMGWENKFSKIKAIKSYSKILTIAKKQLMDKGLIWLEFPEDSLNYDFEEGVSDIHKKVMAHIRDLEPTKYIGKTTAEIKQIQSEVA