Scaffold Ga0307999_1002963

Overview

Basic Information

• Taxon OID: 3300031608
• Scaffold ID: Ga0307999_1002963
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4565
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5735
  • Long. (^o): 77.9231
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011889	Metagenome / Metatranscriptome	286	Y
F016211	Metagenome	249	Y
F028321	Metagenome / Metatranscriptome	192	Y
F039830	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307999_100296311	F011889	AGGA	MNITITLTAAQEKGLAYVAMSPQEWSENAVHNRCRQAIDEIYDMEVARMTADPDITTIPADKDAVVLAANVQTAAQRNAAAEAAAPE
Ga0307999_10029634	F016211	AGGA	VSDLTKAEKDEIAELAADKAYERFYLAVGKSVTKKIMWIASAVLFACWLYFKEGTF
Ga0307999_10029635	F028321	GAGG	MLAEIAIANAIWKTLSTALKNGKQLYEVGSQVNDYLSATQKVKEKAGDANSRGTALEAYQFEEQQRVQRSQLEFHLKKSRLNGWSDFVKFEAEWHRKRKEEEQGKRNARIRRNNKLQKDVALAINIGICMIIALGLLFGIAVYIKGYY
Ga0307999_10029636	F039830	GAG	MNSSPLEIYPVHVSPSLAPLGQELLIEPSVNRVNAEYLVVQPSREPYGVPQEYTKRVWIC