NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307966_1119741

Scaffold Ga0307966_1119741


Overview

Basic Information
Taxon OID3300031607 Open in IMG/M
Scaffold IDGa0307966_1119741 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #646
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1271
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007247Metagenome355Y
F014094Metagenome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0307966_11197413F014094N/AMEVLKANTAQYEALNGFTNGNSHISFIQDANDNWIIGKEILTDDEFLEIRNQLEELEVITYNPKITEL
Ga0307966_11197414F007247N/AMKKFKDYLKRTRHHLHAIVGITGGFLVSLALSWVWLGFRNLEALDKAMWFLA

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