Scaffold Ga0302119_10087291

Overview

Basic Information

• Taxon OID: 3300031606
• Scaffold ID: Ga0302119_10087291
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1276
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 450

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002602	Metagenome / Metatranscriptome	544	Y
F004614	Metagenome	431	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302119_100872911	F004614	N/A	QQIYASNYPTLLNTFMKLSRQQQHRMYSHHEIDADMDEEFWPMMGILLVMWGAWTGVVHFLDWLAFDAIVWWAEPWTIIPFVFLLIMKERFDSLNPLHWWPMFFGYKIKLPDEDRVKIYPIDGADIIKKHGGPLHVHIVDYEHIKFRRKRDAVIFGLRNF
Ga0302119_100872912	F002602	AGG	MKNTDQIKALAVAIEEKDNQIRMLLAQQGNNEVQISEYREIVKELSDKLKMYETKYGTVFKPARNS