Scaffold Ga0302119_10030969

Overview

Basic Information

• Taxon OID: 3300031606
• Scaffold ID: Ga0302119_10030969
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2263
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 450

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007771	Metagenome / Metatranscriptome	345	Y
F010477	Metagenome / Metatranscriptome	303	Y
F010791	Metagenome / Metatranscriptome	299	N
F026028	Metagenome / Metatranscriptome	199	Y
F026902	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302119_100309692	F026902	N/A	MNRYRIEYKEKGIPGILCEYVIGTDEVLSFLLKLKYIDRLKSFDNVKIYLKKT
Ga0302119_100309693	F007771	GAGG	METIIHAKSIDKKVRLALYGMLQHSATKLFPRRMKYVSIKLHLKHYVFDGVAMIEEDTKITNPRNFKIIIDPYRLEKDDWGRERNYSEWVSELLRTLAHEMVHVKQYIMGELTFKKGQMCWKKQKVDYKSGDDYYRSPHEIEANGLERWLQLGYIAAWNKIEEENG
Ga0302119_100309694	F010791	GAG	MSFEFRAGRKRVVKSVETVEEANKLMRRMIAIRNENFLWENINVKTGHLRAVDELEKLVGTVFDVFDTMSIYVNGKSARRIWSRGF
Ga0302119_100309695	F010477	GGA	MRIQIQIQIRYVVFVPYLIFIGMMGGNVLAEAIVIGLALAIYDFLFDNDGGGRPA
Ga0302119_100309696	F026028	AGG	MSICSNCYHRVKLNKAIEVGHLWNNEPFLGVVCSDKCKEEIEKKVADGTWMVMRSFPKKENDDADVGLPTALTDKQFGAE