Scaffold Ga0302119_10006341

Overview

Basic Information

• Taxon OID: 3300031606
• Scaffold ID: Ga0302119_10006341
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5108
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 450

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033960	Metagenome	176	Y
F096642	Metagenome	104	N
F105354	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302119_1000634111	F096642	N/A	MKNKNENTNELTFGGWHSDEKETFTGVRNDSFGNDCRDHDQDAWNFEIDESDCWK
Ga0302119_100063412	F033960	AGGA	MSHLVCYTRRMIKTNMKEYKATYTSKAPFAYPHGKVTLHRRNADARVKHPHPMGTYHIMNWHTAGWPHLETVQVWNPITKRMFEIYSSDEGKTFTFDTVEA
Ga0302119_100063419	F105354	AGTAG	MWYIITMKENITEAQLLLNQEVKINMGQFAGKIAFVRKVMADGRSLEVEIAQTSGKIALMDVTFVSEIHEPVAHAKVEQSLGPDANSVLPHNRL