Scaffold Ga0302119_10005823

Overview

Basic Information

• Taxon OID: 3300031606
• Scaffold ID: Ga0302119_10005823
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5340
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 450

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015151	Metagenome / Metatranscriptome	257	Y
F055210	Metagenome / Metatranscriptome	139	Y
F076507	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302119_100058235	F015151	AGGA	MITLKNGLILSEDKNGFESYNHLTNKIDLKSFTKFNELPDIFYTELLEDDRTLLTNLDHPELSTILDRTNR
Ga0302119_100058237	F055210	AGGAG	MLDLTTTFSAPGSITTPYLRSFMSTFMVGIRNRVANSSSVRNMYVKAFDRDEALGIASLLIRPYDMIVKDVVSPGDEIYGEDCSADADPLPILKSDVAERLEAGKVMNNIFGF
Ga0302119_100058239	F076507	AGGAG	MSLILSIEEARERGMTRLVEQLERDLARRELLKMAPLEEVKDKTESPVWQTDIEEDWD