Scaffold Ga0302119_10001329

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302119_10001329

Scaffold Ga0302119_10001329

Overview

Basic Information
Taxon OID	3300031606 Open in IMG/M
Scaffold ID	Ga0302119_10001329 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11178
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (36.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	70.5467	Long. (^o)	-122.9077	Alt. (m)		Depth (m)	450
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050421	Metagenome	145	Y
F096642	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302119_1000132916	F050421	N/A	MTIENKTLKVGDEIRFGMQLMVVDEITKFDTVVAIDQDGGELELTENEIDIC
Ga0302119_1000132918	F096642	GAG	MKNKNENTNELTFRGWHSDEKETFTGVRNDSFGNDCRDHDQDAWNFEIDESDCWK

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