Scaffold Ga0302119_10000287

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302119_10000287

Scaffold Ga0302119_10000287

Overview

Basic Information
Taxon OID	3300031606 Open in IMG/M
Scaffold ID	Ga0302119_10000287 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	22249
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (40.82%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	70.5467	Long. (^o)	-122.9077	Alt. (m)		Depth (m)	450
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027866	Metagenome / Metatranscriptome	193	Y
F059334	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302119_1000028733	F059334	N/A	MIVKIKLDDWAKRKLEGRLGVSVLGGGVESLKPTDLIILSLINKEDGDTMDLTEEAGKLAKLLDKSS
Ga0302119_100002877	F027866	N/A	LGYIKVMKDKTYLTYQARNAVKAAQVTNHIKSQKKVGVPHNVAKAEAYGLYNIKKARPILVRYWVNV

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