Scaffold Ga0302132_10228738

Overview

Basic Information

• Taxon OID: 3300031605
• Scaffold ID: Ga0302132_10228738
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 886
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 121

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029562	Metagenome	188	Y
F035967	Metagenome	171	Y
F046640	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_102287382	F046640	GGA	MKVGDLVKVHLLNDLDWYPAIGIFTGYCGVNNSLSYVFVDSKKLRFLSMDVKAVK
Ga0302132_102287383	F029562	AGG	MKIGDLVKVSNTAVSIGWKPVQGYLGLIVSPVRLGEDAQFIRVQSVKTGAKIWIRAYRLAPLNETECDK
Ga0302132_102287384	F035967	GGTGG	MKVGDLVKMRWGYSPVGIVKKVAPHSVDGHIVDVDPPQMAVIVWADSNKTNERLKDLKVI