Scaffold Ga0302132_10178789

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302132_10178789

Scaffold Ga0302132_10178789

Overview

Basic Information
Taxon OID	3300031605 Open in IMG/M
Scaffold ID	Ga0302132_10178789 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1033
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	77.9995	Long. (^o)	-150.0065	Alt. (m)		Depth (m)	121
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014551	Metagenome	262	Y
F047110	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_101787891	F047110	N/A	MKTNKTNNTNKMNPVVSINWKIKDLIREKLSFQKWHLTVFGVEASRKVLSKIKADAKELVEMKQAMLSAATDEATA
Ga0302132_101787893	F014551	N/A	KSVILFEVMRDMFKFQYNPARHNGEVNHAGEVFDYLGVIVDHFRNTTEGETFSGVTVEIHDNQGATGQTRRFRWDRMIKAVNIINTAQAMHGGRI

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