Scaffold Ga0302132_10123105

Overview

Basic Information

• Taxon OID: 3300031605
• Scaffold ID: Ga0302132_10123105
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1295
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 121

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029562	Metagenome	188	Y
F035078	Metagenome	173	Y
F035487	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_101231052	F029562	GGAG	MKVGDLVRVNNTAVSITWKPEQGYLGLIVSPVSLGGDARYIRVKSVKTGAALWVRAYRLTPCNETEGDK
Ga0302132_101231053	F035078	GGA	MKEQATKIEKFRSHLLDRIKGDRVGAIDLDPDGNPTFEVMPELQNYSWVLDLANREGVVAIATSGSAGSRLTITEEETNV
Ga0302132_101231054	F035487	GGA	MNIGDTIHLKALGGATKRTKNRIHNRGKSGFEVTRLPQRTNFVNGTSGDGDWVMLDSLDSLWSGWLPMDEIEVINESR