Scaffold Ga0302132_10083760

Overview

Basic Information

• Taxon OID: 3300031605
• Scaffold ID: Ga0302132_10083760
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1623
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 121

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001493	Metagenome	683	Y
F005516	Metagenome	398	Y
F075331	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_100837601	F005516	AGGA	MKTFKTYLKEFAIKSTSDYVFEVGSQALGSSALKIPISGPMFKRIWPDTIRTTVFHVLSAEDIYELKKLEGKKKSISAFFSMMAKQFEGGIAAGGGVVAELDADVLVSARDDIMSEVDKTGRRWVMMSWFENQTRERGKFSKVEKDLNVLIKGLVVKHLGPIMGQTEVRRAQE
Ga0302132_100837602	F001493	AGG	MKSFKQYLKEAPAWTESLSTMLFDLPREGLKDLKIPLSPAIFKRIWPESVRSRVFHLTDDEGIRKLKKIQGKKKSISAFYNIEDYILSSGIKTDGGYVVELEGDVLAAAPDDISSQPDKTGRRWITFSSLMNPSTASDPGLGGGSKLKKIEKDLEKLLVEILVKNGMGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLKSIFTDYAFDKELVPDPDSGDKALWDEVVVNNFKIKKIHVTEEFGEDWQDDDDIEGFPFELYPNGNGDLIDYIARTRNS
Ga0302132_100837603	F075331	N/A	AWDEQVVDKIKIEKVHTFNTATRPFEWIDDSVIPRLGRIPHKHWKSATELSTYISQVADAEVRTFGGWARKK