Scaffold Ga0302132_10028306

Overview

Basic Information

• Taxon OID: 3300031605
• Scaffold ID: Ga0302132_10028306
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3001
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 121

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004163	Metagenome	450	Y
F012625	Metagenome	279	Y
F040339	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_100283063	F004163	GGAG	MEQIKRIVLDLKYYFEKSLPLILIGAALGYTFASHLEEKRAEPVEIGFATVEDMSFLISELEECRINSGSLDGSYE
Ga0302132_100283064	F012625	GAG	MDPIHNKEISVGDLVREHTKHSKKRVGLVHEVISNYYLNIKWLDGSSDYPHYRHRNKYEVTRFINGEYKDILEDYIQQGKSKRW
Ga0302132_100283066	F040339	AGGAG	MSIKDKLDRETYGELMYRLGKMDTILQDMNSTIARFHEESRSIREAHSPEHVKALNEALQRTAHTPTDAQRQEEEEE