Scaffold Ga0302132_10023954

Overview

Basic Information

• Taxon OID: 3300031605
• Scaffold ID: Ga0302132_10023954
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3283
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 121

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014465	Metagenome	263	Y
F029745	Metagenome	187	Y
F077179	Metagenome	117	N
F081216	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_1002395412	F081216	GGA	MDNFQVGDLITLKHHRGNPLAPAPLAIVVNTHAILFDRIMIQHRGTSGPEMAAPEHWMVVSRNENR
Ga0302132_1002395413	F014465	AGGAG	MKTRGMIMIGALVRDCSKIMKIVTGYKCSQRGEYVQFAGDHATAWYPLDSFEILSMDP
Ga0302132_100239542	F029745	GGAGG	VPTHTDLRIGDVVKSRVTTESLAGFITAIEGIHVWVRFFDTKFEDGDSWDVYTRPDTLEVLSRANSSRT
Ga0302132_100239545	F077179	GGAGG	VKINDYKAGDLIVFFRGPSRFEASPEDIGWIVRRDFDDPSEPAVLVGFPHRPNNLLHYYDVELYEWEKSGTIEVKRG