Scaffold Ga0302132_10018173

Overview

Basic Information

• Taxon OID: 3300031605
• Scaffold ID: Ga0302132_10018173
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3823
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 121

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029601	Metagenome	188	Y
F032335	Metagenome	180	Y
F040057	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_100181731	F029601	AGGAG	VRFDAPDDVFHGKKGIIVRFVESGIYTQGFHYEVQTFCGYTIVALSFEIQRL
Ga0302132_100181733	F032335	GGAGG	MKVSELKEGMLLRFKEPRVYKYLRDSGDDFWLDCGALDPNITLKWVQTGQPLMIYVGQELMEHPSHYGSYYNVRKVCVEGREAWMWPDAWRYVEAV
Ga0302132_100181739	F040057	N/A	MKPEIKDTDIIIRRAANGWIAFTGSEYEADHFMTTVYEDGEPWGEQEALIHLFREHFSYYVQSKKCGGIKLEVREKGYALEEDEEENV