NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302132_10004131

Scaffold Ga0302132_10004131


Overview

Basic Information
Taxon OID3300031605 Open in IMG/M
Scaffold IDGa0302132_10004131 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8220
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)77.9995Long. (o)-150.0065Alt. (m)Depth (m)121
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005547Metagenome397Y
F012507Metagenome280Y
F037424Metagenome168Y
F044592Metagenome154Y
F058454Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0302132_100041311F044592GGAGGVKVGDLVKYKGSVGIVIGPCIKRWADPADVWVLWTDDHKPKIENGDFMELVNASR
Ga0302132_1000413110F012507N/AMWTDKLKIGDLIWSRQDDKPAIILDSAETARAKYGDLVNKRMEFKLHVDGQQGWLDEVKLRALYKLP
Ga0302132_1000413113F058454N/AMKVGDLVTYAFQAARWRKGQSVDVGLVVETGKYTGNADVKVLWMGSGAAAPYAITQKIDHLRLVDDSLTR
Ga0302132_1000413115F005547N/AMYGMPTTLKTGKIMKVWVMQGSYEGELFSSVHLTQKGCALACISDIIEFHGIDDDETALEVMHNSYEFTDDEKEVREATKPFEWDQEKLKEMTSKQLWKIFSDWCEVSWDRMGDRSYHIDGSPAELQA
Ga0302132_100041316F037424AGGAGMSWSGTVTCSHCYRQGHNKRKCEVLTERTLRNYNDNVGWAAAIGEGDPDYYLRQAERYRLEYMKRTKIDPASGEKVKNKTAKAERMKKVNCGYCGDAGHTRRVCEVVKRDKLVFIEESRRARAAAFEDAVNMGIGEGSMIPIRTNGYNSDNKWGAYTSLRYVKEIDWDAVTSARPTLWVYHVEAGKLGSANQSRWTSRDQIRGMQENFNEARAYATTMSQPVPSASLIPSLDVPAGWMDCEPSTIDVAVHFPTKGNKYHKQRAHLYAWPSKDTKQAIIDLGLEEHWKGRL
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