Scaffold Ga0302132_10000273

Overview

Basic Information

• Taxon OID: 3300031605
• Scaffold ID: Ga0302132_10000273
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28367
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (86.84%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 121

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022210	Metagenome	215	Y
F060978	Metagenome	132	Y
F087321	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_1000027319	F022210	AGGA	MITINNATVETLDSTQARSVGSTVLSVTIGDHTFQMLVDEDELIQALASQYGGTKPCLTPAP
Ga0302132_100002735	F060978	GGAG	MKYKTKKTDRGTIEFGANCITITIESEPWKAGRIHSVNKAGAGNHEDRRTKRNRTRANQNQNAIKESM
Ga0302132_100002738	F087321	AGGAG	MKLDDVFRIALKHFPMCHVIEDMEGEVVIFTGLVSDKNQELRDMTHEDIK