NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315309_1000004

Scaffold Ga0315309_1000004


Overview

Basic Information
Taxon OID3300031604 Open in IMG/M
Scaffold IDGa0315309_1000004 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)345699
Total Scaffold Genes389 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)286 (73.52%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location
Location NameIndonesia: South Sulawesi
CoordinatesLat. (o)-2.7726Long. (o)121.4938Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006925Metagenome362Y
F008219Metagenome337Y
F039458Metagenome163Y
F093178Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315309_100000411F039458AGTAGMGRGKVKKTAEKQIRALFVEHSIPPLEVIIPILEKTGRGEQELTTQLYNTYTDLAKGMREILGLKDKNMKTLAKVWEIVLGFEGSKFEPVELTESRFSFSIPDCPMLHVGKDVGLNVKGKFCDLICTAGSRALMDTVLSPHKGNCTWDKALIRGAGKCTVIFEFVNAT
Ga0315309_100000413F039458GGAMKKTVEERIRALFAEHSIPPMEVIIPILEKTRRGEQELTAQVYNTYTSLAKGIKEILRLKDKNMETLAKVYGIVYGVSGEKYEPSELTDSRFSSNLSDCPLLHLGKDTSFNVKSKFCDLICTAGSRALMDTVLGPHKCNCTWDKALIKRAGKCTVVFELVKAT
Ga0315309_100000414F093178GAGVSFLKNSLLLISILLVGLGLVFILVWLGMAKSISYADMKTILTTTTATFGTLLGIITAGLMFTQGRFSELASELTEKSPNYLTKALSLEKIQSIETHLLTLKKAFTQLAASTTIAEERNLYERIATKASSIFVDFAVLLNLKLTQQGLVDTGLLVSEMDSSLYKVYQKRRQSINKEWQIFSVIKRIIDTWEASAALFIEKSNRETPLQADLKSSIAILKLKENVGESSTNIRTEVAKTLSELNDELGEISKQLHEDRIPQLLPQMKQASTIRGKYFYLALVFIATPLLINLLTLPQLSETTTTFFQPIISITSFLSVLGVIFLLLYIHKILSV
Ga0315309_100000461F006925GAGGMAVEVSVLENFGREAELKKKWMRMWESLGKRILRMPKWMQDIVLEDINTAIRNRISVMEMIQNANRNH
Ga0315309_100000477F008219GAGGMPKYLVEIILVVNAKDLDEARRVADYIIDIPIPDKKIENAIETLRYEEIVQIRT
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