Scaffold Ga0315309_1000001

Overview

Basic Information

• Taxon OID: 3300031604
• Scaffold ID: Ga0315309_1000001
• Source Dataset Name: Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 826930
• Total Scaffold Genes: 907
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 655 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location

• Location Name: Indonesia: South Sulawesi
• Coordinates
  • Lat. (^o): -2.7726
  • Long. (^o): 121.4938
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009732	Metagenome	313	Y
F029354	Metagenome	188	Y
F086591	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315309_1000001394	F086591	N/A	MSLKKHLAKSYIPSTTKWKLVLKGVGKLYRAIYDELEKDDKGPSAKVLADAAYRVGLEFGETVKEKFKLGNTIDDIAFAMEIDHKVFGVEATLAEKTDKKIVYHCYRCAWKKYFTPKLCIAIGQAEKGIAHALNPSAKYNVLQTRTMGKERCIIAIEL
Ga0315309_100000173	F009732	N/A	LRDEIDFQCPIGFLIYIQIYPRLQIVRTEKFLRKNLSEVKFEEFKGKSFELILVVEMLCEVCEKPLDMREKSLCRTQISCKEDYENLLNKGTVHDHVEVDLESGKIYFYDHDFPGDVHPECIEKL
Ga0315309_1000001746	F029354	GAGG	MEEFEERFIKPIVNASYPATLSALSLTVLQVTGLSGKPTPYPLKTTLLLAAAAFLLSAFSIFFYNIYPTRKKLWTVAAVAFLIGLFCAIVSVFLLFII