Scaffold Ga0307989_1015066

Overview

Basic Information

• Taxon OID: 3300031603
• Scaffold ID: Ga0307989_1015066
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #185
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2060
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010879	Metagenome / Metatranscriptome	298	Y
F016206	Metagenome / Metatranscriptome	249	Y
F023717	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307989_10150662	F010879	GAG	MAQKRQVLKEVLFDDVEEKIEYDFLTRDQFFSKVPQRPMSAHGIEMWEKYLQDPKGFKF
Ga0307989_10150663	F016206	AGGA	MAQAKKTKKKITKVLTPIIESPKKVEKTVEVAVKYVNKTHWDTKEAFTAAIDKTGLSADQVNVNSEWDLYQSDTDGYRNHLKLEN
Ga0307989_10150664	F023717	AGGAG	VAKFRSTKSKKELEKEGRALGVELDRRHSKEDLIEELEAVEPELARFATDKEAGFTEKSSDVTWNSIEEFTEAVTSTGMIFDSAFIPVNIKALYEAYTSNSAEFKETPAYKFLTK