Scaffold Ga0307989_1001674

Overview

Basic Information

• Taxon OID: 3300031603
• Scaffold ID: Ga0307989_1001674
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #185
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11480
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (78.79%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F001048	Metagenome / Metatranscriptome	793	Y
F006609	Metagenome	369	Y
F012919	Metagenome	276	Y
F018265	Metagenome / Metatranscriptome	236	Y
F046020	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307989_100167415	F012919	GGAG	MKISRKKLNLEIIKYLKKGGKITKLPDGPNYRFQPYGVRVTPGDPTVDLTITDSPTTKQQIKYVEENSL
Ga0307989_100167417	F000615	GAG	MCKIRCFYECSDGTMGWSEMILSYEEDIKAAIKHWSTGGRMVTTEYFEV
Ga0307989_100167419	F001048	N/A	MKKKKMSPKHFWWKFNDLRKNGAKITVTDRTSEMDVKEYNRIELLVNSRVRWELGVEGFMKWDSCGVKDITTLARAYGIS
Ga0307989_100167425	F018265	GAG	MSMELHTLRAVSITQHILELQKVNRELVTVRKIVTELEQRKMELLSS
Ga0307989_100167427	F046020	AGGA	VWVSIILFTFSLAGQIDQHFKSKELCWEFYENHPLLYRQIDEAFPKDYYVRLYQNDEHGLVWITCEKLSDMKGNDNSQFPLNVPLPTPTKK
Ga0307989_100167430	F006609	AGG	MTNELLTRLIAIIARFDQGLTEAKGGEGIDKPAIREAKLILSSDDNTSFVYDLNHNDAAEVVGQFSLFKKGEDEVVTPIPITSFVHEGKIEGIDTKDILLN