NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307993_1023926

Scaffold Ga0307993_1023926


Overview

Basic Information
Taxon OID3300031602 Open in IMG/M
Scaffold IDGa0307993_1023926 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #260
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1534
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010318Metagenome / Metatranscriptome305Y
F010571Metagenome302Y

Sequences

Protein IDFamilyRBSSequence
Ga0307993_10239262F010318AGGAGMSDWIEGTKPRYLECIYETSTDFDLEELGIDWDKVDDYYVKYGSLTVKFKDGTTQDYDGDEGEIDYKWAVRENIFDEGWTLVEGLN
Ga0307993_10239264F003976AGGAGGMSRTYNDYYFEKLDILDTLDKLEMSVRFLNAWVKEPMGLENAKYILEKNANRKFNWFDMNMIKDIVTTEGGEG
Ga0307993_10239266F010571GAGGMSNIITETYADKLYEELYEKYYEEVGKTTDDVEYIEREAERLAEIDLDNFEMEG

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