Scaffold Ga0307993_1023926

Overview

Basic Information

• Taxon OID: 3300031602
• Scaffold ID: Ga0307993_1023926
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1534
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010318	Metagenome / Metatranscriptome	305	Y
F010571	Metagenome	302	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307993_10239262	F010318	AGGAG	MSDWIEGTKPRYLECIYETSTDFDLEELGIDWDKVDDYYVKYGSLTVKFKDGTTQDYDGDEGEIDYKWAVRENIFDEGWTLVEGLN
Ga0307993_10239264	F003976	AGGAGG	MSRTYNDYYFEKLDILDTLDKLEMSVRFLNAWVKEPMGLENAKYILEKNANRKFNWFDMNMIKDIVTTEGGEG
Ga0307993_10239266	F010571	GAGG	MSNIITETYADKLYEELYEKYYEEVGKTTDDVEYIEREAERLAEIDLDNFEMEG