NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307992_1174017

Scaffold Ga0307992_1174017


Overview

Basic Information
Taxon OID3300031601 Open in IMG/M
Scaffold IDGa0307992_1174017 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)817
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048102Metagenome / Metatranscriptome148Y
F078575Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0307992_11740171F078575AGGMTQKLNVHFVNRGYGTDEGEHTVELFGTGLCDYTSKPLAEIRSPFGLKDNRLTAQYEGNKWVCDLD
Ga0307992_11740172F048102GAGGMLIEKDTKEATSKFFAVADIDARAAAAYAANKQLFNSAQHTTKVELVDSILKTMFIGYATAYQTSRAATKKRAAHTEVKYFRVVTYAATQHKKLKALAVEQLAALGLDLVYKPRTDSYSVHVI

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