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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031601 Open in IMG/M |
| Scaffold ID | Ga0307992_1020810 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #133 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3047 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Southern Ocean | |||||||
| Coordinates | Lat. (o) | -68.5958 | Long. (o) | 78.1913 | Alt. (m) | Depth (m) | 60 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039448 | Metagenome / Metatranscriptome | 163 | Y |
| F078142 | Metagenome / Metatranscriptome | 116 | Y |
| F098516 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307992_10208102 | F078142 | GGA | MSFATEAFNSIYASITIAQCQIRIGRTVIAKALCSGIGKLRENTDEGQLGSIDANVRLLATDEPDDEIKTGTVIEILQNGQDEKTGWVKARVGGRFPVGGLTRLALEAVNE |
| Ga0307992_10208104 | F039448 | AGAAG | MNTAKAIELAMAETLRKYAEMGAAVVVRAWQSLESDGSWNENPDRKFPMIDVRCSPPGHDDNESTLQVECRIMMGTNTDDDKNHAFISNMYEDVQDVCDTLFAQYKTGVFTGEELAYFLARVVAETSSDAFQFGGLTFGEGLAPADDGGINTIGITMIVHYGRSDF |
| Ga0307992_10208105 | F098516 | AGGAGG | MAISEATSFGALTDHFAILETVHDAGTLADIMVLVASSKVRRAQSRADAQDANEDIAASAYSGNSAEEITEVSCTYALKSGTLDISDLVIGELAVQIMAESLALTTANGGWPQITVTGYLGLETITAPTSYTNQFTLPAISVLGIKQAQVLGFTVTTGRLTGSGISFNCSMAEQLDGVGEPAAHGVSGGTGEVTADFVRVDSAPAWELAAVLADSGDGAVFMAEVTQDPQADEGQAAWHTASGAASFNLARLAS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |