Scaffold Ga0307992_1003536

Overview

Basic Information

• Taxon OID: 3300031601
• Scaffold ID: Ga0307992_1003536
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #133
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8611
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031354	Metagenome / Metatranscriptome	182	Y
F059653	Metagenome / Metatranscriptome	133	Y
F091296	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307992_100353611	F031354	GGA	MKTTFDINDILFKVVNVVSVKTTIDGGVYRNKKPLNSELQDVIILPLNNYVGSEIINDSTFIINCYCKNFTGGTPDITKLRAITNAVVTVIEAYSNTSNYYVFDIVNQILLQDTEQVSMSYSSLRIQCFIEK
Ga0307992_10035368	F059653	AGGAG	MTNLEALQSQTEYSNDNLLEKILLDKGITSGDTYVAANEKNIDLAAASLYFTLAAHPEFRDGKTSIKYNSVQLIAMARAIERKYGVKVATVDGAAIW
Ga0307992_10035369	F091296	GGAG	MVIKRYPHTATISYYGAGTTNSIGIYTPGTLVTVGIVCNIQPNTTRYMVSESGDMIGYNFDIMSPLFTGAGSVPDDAKIFFHNKDHVIKLLYPYQKHVEVKC