Scaffold Ga0308007_10212128

Overview

Basic Information

• Taxon OID: 3300031599
• Scaffold ID: Ga0308007_10212128
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #71
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 669
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5735
  • Long. (^o): 77.9231
  • Depth (m): 26

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007551	Metagenome / Metatranscriptome	349	Y
F033953	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308007_102121281	F007551	N/A	QIKEQEGFITAILTQAVEDTKYSGFNKHDLQHKIESINWIMGNDPQFIMYCKLLNIEPSYIQNKIRRTVDTRITAQQKVLLKPIVEKLLKSKAYNQVSVKQIEVQDVRI
Ga0308007_102121283	F033953	GGAG	VLNKEDRDLQEAMDDLFRYTLIMGVKFNWQIIAATLVTIGLRLYKTVLDEQG