NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308019_10314252

Scaffold Ga0308019_10314252


Overview

Basic Information
Taxon OID3300031598 Open in IMG/M
Scaffold IDGa0308019_10314252 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)580
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035489Metagenome172Y
F046009Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0308019_103142521F035489N/AGLKPQFENMSTGLCAIQLALETGYDEIDVIGFSGLKDRNYKNVYDGTKNYTFDPATPDKVRVPENYVPLDASHWENVYIKLVKQYPKIKVNLI
Ga0308019_103142522F046009AGGMTTLKVIPEEKPDINKVQTCNLLDKSALSRNVFTKEECKRIIEMGRSWELVDAQIQTKSPEEASEKNDDYRNCKMYGPPVDETAGWLWIGQKISTAIYNF

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