NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308019_10229183

Scaffold Ga0308019_10229183


Overview

Basic Information
Taxon OID3300031598 Open in IMG/M
Scaffold IDGa0308019_10229183 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)710
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017420Metagenome / Metatranscriptome241Y
F099118Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0308019_102291831F099118GGAGMSLEFETHTDTGEEYTCDKCETAILGPDEYDSNIKFQYHYCEPCWNYIHLKKGTCGQ
Ga0308019_102291832F017420GAGGMNTNKIKKVSVKFPNFVSKDSVEYEGKRVVLKLPQIQDVNNRMYSELFSGDSGMQVGPKQLPHIEGFNCTWRNDENNPQFTIAQFTMASGEERKVMKIVEKYGGQIIESRADLNQWQFDETNLSGNTYQVENVHETLGRMT

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