NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308019_10169041

Scaffold Ga0308019_10169041


Overview

Basic Information
Taxon OID3300031598 Open in IMG/M
Scaffold IDGa0308019_10169041 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)860
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005610Metagenome / Metatranscriptome395Y
F008648Metagenome330Y

Sequences

Protein IDFamilyRBSSequence
Ga0308019_101690411F008648N/AMKSFKQYINEARGSSLSDLLFLPRIGYYDQLMIPISSPIFKRIWPDTLRATVFHTTDEKGIREIKKLEGKKKSISAFFEMQARYMRTGVATQGGIHSVLEMDADVLLSAKGDIMSHLDRTGRRWTSISDLKETSRGINFSKVQIDLERMFSPLVS
Ga0308019_101690412F005610N/AQRFSILYRQDKELMKRFNEYLMEADSEEVRDAKKVFTALQGMYPELPKFPLVFKNLKGKGSGYIETSKIKGGKVIFIDKIVIDDSGMSSFDPDYAVVHEFAHAILAVTKGDLGHNKKHADLTHKLAQKFGLT

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