NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308019_10036419

Scaffold Ga0308019_10036419


Overview

Basic Information
Taxon OID3300031598 Open in IMG/M
Scaffold IDGa0308019_10036419 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2153
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015932Metagenome / Metatranscriptome251N
F065122Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0308019_100364191F065122N/ARQIVFDSRIPYLIRTPENGKTSLRLVFKGTNKDYIPETTGDEIVFTEVE
Ga0308019_100364193F015932AGGAMRMNTTDILNRLNNLADTVCLDDGNVVRWCIDQDDHDDVPDRTARGILHQHDLRVSDLQTLLNDGVLVPTASDDVIGAMVDDRCLHITTDLAAVQQHLPNILD

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