Scaffold Ga0308019_10031442

Overview

Basic Information

• Taxon OID: 3300031598
• Scaffold ID: Ga0308019_10031442
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2349
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium TMED32 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076499	Metagenome	118	N
F081752	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308019_100314422	F076499	N/A	MAIALGVMTLIATKQQHKVKTVVITESHTDTLYVELPADTVFLDKVRYISKPIHDTVYVNQEGDSIANYSGEFFVDSAVTVLYNIDVKGMIQGFNFGAVKNYPPQEVITKTITNTLTEYQTMEYKALWAVLGMDMMGSSSIGLDWQNQNKAFGVNYNPIDKVIGFNYKLRLFKTKK
Ga0308019_100314423	F081752	N/A	MIDISIYDIIAAVVGILLFWILVYWAEKDKFDDNDEKMKFRSWCQAWWNKNNDNVLAHFFVTAFLLIIGIENTRALLSKYFDIPEGMDGLASSGLIGFSGSLISDLLKRMIKPVKK