Scaffold Ga0308019_10030262

Overview

Basic Information

• Taxon OID: 3300031598
• Scaffold ID: Ga0308019_10030262
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2402
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013820	Metagenome / Metatranscriptome	268	Y
F015741	Metagenome / Metatranscriptome	252	Y
F022754	Metagenome / Metatranscriptome	213	Y
F029783	Metagenome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308019_100302622	F029783	AGGAG	MLGELSGDTADFLNEIPWFDGIIYILIVMGAYIFYKWVNSKF
Ga0308019_100302625	F015741	GGAG	MKLKLKLGLVLVCLMFSMGCSILTQLIPPVANFALGFYDANDYYSKECLWYDEVKLNDETKKWLLESNPPEIVSQDLSKVSRNNDIYKEVCKKDKNMADKLKGKAERILK
Ga0308019_100302627	F022754	GGA	MNELIITIMLIIPSPSKLVNWSVNKIPTQVQIIHKSGLEVSYNANPVSCKFRPRNTNEMVFKSSNDHCYAIYDLSNPTFIRHPNHWYKVNLGE
Ga0308019_100302628	F013820	AGGAG	MTPVISTIISFIDKAIPGYKTYALMLVGALMMGCQMMGFHSFSQEAWGLLGIGGAATWKIGTDRDPTKKK