NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308019_10020251

Scaffold Ga0308019_10020251


Overview

Basic Information
Taxon OID3300031598 Open in IMG/M
Scaffold IDGa0308019_10020251 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3036
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F002874Metagenome / Metatranscriptome524Y
F023718Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0308019_1002025110F002874GAGMKEKIDLSLNRSLEELSSSYWEFLEATEGEDSSGWSKSVQVDLSALEGYLMKMEVL
Ga0308019_100202512F023718N/AMEIDMSLNRSLEELISSYWEAENAGIDSSAFYALEDYLSGMGAL
Ga0308019_100202513F000615GAGMCRLRCFYFEFGEWGWAEMVLSYDDDIAGHIRHMSTGGRMVISEYFEV

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