Scaffold Ga0308019_10002375

Overview

Basic Information

• Taxon OID: 3300031598
• Scaffold ID: Ga0308019_10002375
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10774
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002874	Metagenome / Metatranscriptome	524	Y
F028833	Metagenome / Metatranscriptome	190	Y
F038414	Metagenome	166	Y
F041248	Metagenome / Metatranscriptome	160	Y
F049706	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308019_1000237513	F049706	N/A	MKQLDEVLKQYSVVKVSDDNGAHHGVDYEEMKQVILDSLFTSYLGETIRK
Ga0308019_1000237514	F028833	N/A	MSNLTYLWSDGMVDSIAKKVVEEPMENVDDRPQHVIDEERGDAIRQWRKEQAQLEMFNDPVMNWSGLR
Ga0308019_1000237515	F041248	N/A	MNQQKRARQEGAIERTKASILVYEEKLKSCEDDTEKKLLKKKIERAQTTISNTKLI
Ga0308019_1000237517	F038414	GAG	MTREEQRNNTINEFYKKRTSPKTLQIQASKTARSQAEWLHISTSEIAGEGRGTYDVGSRAMKRDRLADKKLRAKQANLR
Ga0308019_1000237520	F002874	N/A	MREKIARQVQLIDLSLNRSLPELESSYREFIEATEGDDSTEWSRSIQTDISSLEGYLMKMDIL