NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302116_1100785

Scaffold Ga0302116_1100785


Overview

Basic Information
Taxon OID3300031597 Open in IMG/M
Scaffold IDGa0302116_1100785 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_SCM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)956
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004614Metagenome431Y

Sequences

Protein IDFamilyRBSSequence
Ga0302116_11007851F004614N/AQHRMYSHHDHDIDSLDDEFWPVLGILLAIWGTWTGVVHFLDWLAFDAIIWWAEPFTIIPFLFLLVMSERYSSLNPLHWWPAVWGYKIKLPDDERITIYPINGEDLLKEHGGPLHIHIVDYEHIKFRRKKDAVMYALKNF

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