Scaffold Ga0302116_1073259

Overview

Basic Information

• Taxon OID: 3300031597
• Scaffold ID: Ga0302116_1073259
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_SCM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1196
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000679	Metagenome / Metatranscriptome	939	Y
F094783	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302116_10732591	F094783	N/A	DLKAATKSTLLTLALALEFAQNTTKGEGAFWTTVEFGGRRWTNDKMSPS
Ga0302116_10732592	F000679	GGA	MTTNEHHEWLKNRDWPSVQNVMLHPERDVDLLVRKYKERDEHGRLPHHWLALKAQTHTHTLAMVGMVSIQFNHEALITRDNKGETPLDIARRSGACAEIIGLLSLTPEEVRSLDGEGMARLYAPVFYWRNEMAVWIKSRSYADCHKFINEHDDELVRGVLKYMNSELLREVACESNIYSDSLVFLALRMIHRHPLSLTDKTDQGNTMLEFAESTQFNARREIQNVLRLTPEDISSTPF