Scaffold Ga0302116_1003787

Overview

Basic Information

• Taxon OID: 3300031597
• Scaffold ID: Ga0302116_1003787
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_SCM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8526
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082061	Metagenome	113	Y
F089757	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302116_10037871	F082061	N/A	MIWAQIFPFVTLQFFEGELKSEIETSLIVSFTVWLLLNIAFFCTIDLAYLHTFFGTMTGPQYTVQLYKDAKDDAMRWDAAFTNRISYTKPIHGEIKEWVKENIERWRSEKPSWFQVDLIPDDFLPVDVLEAEGGARRRRRSSISVRDIIGLTRDVGVDDNRVHPFTA
Ga0302116_10037874	F089757	N/A	MVPDDNRARGRAFFLMTAISTLHNISRSVGCAMMMTGDRTLFVWLLGGELTVHFIVKIVRGDFLCYIPMHGAFGYIVSFLWHLVTKVVADFR