Scaffold Ga0302134_10243931

Overview

Basic Information

• Taxon OID: 3300031596
• Scaffold ID: Ga0302134_10243931
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_SCM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 706
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F010950	Metagenome	297	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302134_102439311	F005547	AGGAG	MMKVWVMQGSYEGELFSSVHLTQKGCALACISDITEFLDISDEESALDVIQDRHVYEPPVREKEDSAEPIEWNQEKLKEMTSEQLWKVFADWCEIGWERMSDRSYNLDANRVEIEA
Ga0302134_102439312	F010950	GGAG	MNIWVVRNTCLYSNETYLSTHITEKGALITAIKVVREDLTSGYDEDELEDNRPDMPHHHEEDLMQYGSDQLRGIVDDWWEYSIDL