Scaffold Ga0302134_10112498

Overview

Basic Information

• Taxon OID: 3300031596
• Scaffold ID: Ga0302134_10112498
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_SCM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1174
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019853	Metagenome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302134_101124982	F019853	N/A	MTFKLNKNLPLSEQDTKRTKRIISKLNLKKLPFKITEEQFCSSYTEMFRELTPLFKYEPHEYAMKWCLSTEKRMRVFLLIFEANELGEEIYKESISSKLPEYSYKTIAQIIDDGLKKGYFIKLAPRTRISTDAKIRNIRPSEELVIEFINWNIDLLSTFSNFSKKFR