Scaffold Ga0302134_10019878

Overview

Basic Information

• Taxon OID: 3300031596
• Scaffold ID: Ga0302134_10019878
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_SCM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3155
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004537	Metagenome / Metatranscriptome	434	Y
F094795	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302134_100198781	F004537	N/A	LLYPVRVICPPGVTTGVSFPDQFLGRAISLKITNNDAANAASYDYNLNGQPQNLAASAFSTIDNTVVNYLTIIAGAAGTVLVEAQVLPASRSEVPIEVQV
Ga0302134_1001987810	F094795	N/A	MKRNEIFIIGGAILAAILLFKGQATSSISGSIPFINPFSNLLGKAEAQALQTLGSNIETLQSVKQSNLGIAQSILDLERSTADVKISQQQTELDKVQGYIGSQQKFAASGAFASLAPPQSGWQNNAQALLNKFSQAGFGQSLFPDFRLISNQENYGIVAQQARYEIAQGNIAKASEFAIRQQGEIDRLNEEYQTRFGGLSRYG