Scaffold Ga0302134_10011503

Overview

Basic Information

• Taxon OID: 3300031596
• Scaffold ID: Ga0302134_10011503
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_SCM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4187
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024418	Metagenome	206	Y
F046640	Metagenome	151	Y
F105880	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302134_100115031	F046640	GAGG	MMKAGDLVKVHLLNDLDWREALGVFMGYQGRKDGYTSHSFVFVEGKRLRFESMDVKAVK
Ga0302134_100115032	F024418	GAG	MIGKLVRHIELDAIGIVVDHFVYSEFMGGYKVKFLKPVSRASIGMHPLSGFMEDIIGKVTSFEEVTNDESR
Ga0302134_100115035	F105880	GAGG	MRIRKAIFSRAITFLSMFLSPADAEELFNELRDIAEKHKKH