NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302131_1001978

Scaffold Ga0302131_1001978


Overview

Basic Information
Taxon OID3300031594 Open in IMG/M
Scaffold IDGa0302131_1001978 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB9_20m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10907
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)77.9995Long. (o)-150.0065Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079229Metagenome116Y
F092731Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0302131_10019787F092731AGGAGGMSKNKLSTQATEVYNTLLELNWSEPYLTLEHIQAATGLGRSKLAPVLAELVGASKVLHGNEEALGELIETFTPKVKGVAYGYPLDYYTFDEWIENKLDIN
Ga0302131_10019788F079229AGGMSTLLTKLDDIQYDVNFQFAIALSDPELVVASLSDHGVMMTIAKANELIVNLRKGGASHEQK

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