NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307996_1151846

Scaffold Ga0307996_1151846


Overview

Basic Information
Taxon OID3300031589 Open in IMG/M
Scaffold IDGa0307996_1151846 Open in IMG/M
Source Dataset NameMarine microbial communities from David Island wharf, Antarctic Ocean - #35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)610
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5781Long. (o)77.9617Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009180Metagenome / Metatranscriptome322Y
F053571Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0307996_11518461F009180AGAAGMKCVQGDFARIIHSVNPSNIGRVVKVVEYIGKFEADEQFEAYSMTCTCMVHDHYWWIQGEDIDIQLGPSPKAYIADTWLEPIRPEAKKTKTKAEKELDMFS
Ga0307996_11518462F053571AGGALNPTPRQTDLDSEKLIKEFLAKGGAIEQCEPFARTPDLEVKGGFYGRKPKKKEDE

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