NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307996_1070094

Scaffold Ga0307996_1070094


Overview

Basic Information
Taxon OID3300031589 Open in IMG/M
Scaffold IDGa0307996_1070094 Open in IMG/M
Source Dataset NameMarine microbial communities from David Island wharf, Antarctic Ocean - #35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)930
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5781Long. (o)77.9617Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006719Metagenome / Metatranscriptome366Y
F049237Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0307996_10700941F006719AGGMTTTTVNYTPEMIAVLTAAAPINHEKAQALAVQLDRGVRSIIAKCKREGIEYISKPAPAKKKAAPTKTDMVAAICAGLDMESCAGLEKATGQSLATLLSSIK
Ga0307996_10700942F049237GGAGMNNTTATAIGYVGAIIMAVFSFTMLPVIAILGLALLTVQMVYARIWNLVVLNLVSIGGFAVQLMGA

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