Scaffold Ga0307996_1003362

Overview

Basic Information

• Taxon OID: 3300031589
• Scaffold ID: Ga0307996_1003362
• Source Dataset Name: Marine microbial communities from David Island wharf, Antarctic Ocean - #35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4297
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5781
  • Long. (^o): 77.9617
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040861	Metagenome / Metatranscriptome	161	N
F048411	Metagenome	148	Y
F062174	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307996_100336213	F048411	N/A	MRIDINWKNGTYTFKHGNRIVTKSTLQNKKVCDNITNEINEMFKQLEI
Ga0307996_100336215	F062174	N/A	MITKELDTYISYDRKIKRMQDVMGGGFRMEMCAEYCKPLITDGFDLEDIVEYFILELRDYSDNRYDDDIAKDKEREQLDKND
Ga0307996_10033623	F040861	N/A	MLEKLKPLRSTPTGIYFRMADGRIGYANHQYARVSVTREGIRNGQYYKEDCSIGDRMYQINKKINYPHHETSSINMIGRVRYNDISEAINALQLFNCKNCGEGAIEYRKNKILKEYNEHKALNIRSVLTREEIEAVLPLQDAYNKGHDDGRENGYEDGYNEGFSEGVISVEEKLNKLLNT