Scaffold Ga0307996_1000351

Overview

Basic Information

• Taxon OID: 3300031589
• Scaffold ID: Ga0307996_1000351
• Source Dataset Name: Marine microbial communities from David Island wharf, Antarctic Ocean - #35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12288
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5781
  • Long. (^o): 77.9617
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006322	Metagenome / Metatranscriptome	376	Y
F010877	Metagenome / Metatranscriptome	298	Y
F084717	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307996_100035110	F006322	N/A	MPTKRDKSGAIIAGKGVNLTDLQEQFLEGIRNEGMESASKLSKELNYTSFYRDRRNYGTAFYKELMKITNAELSSIEAAKGTNLTALIRIRDNAIAGGDMKAAMESIKIINDMQGYKAPTKVEQTKFDIKATIDLTVPVEENDGFLDIDFTDED
Ga0307996_100035111	F010877	N/A	MTTESFLIALAGNGLPKGEMKAEMFRFHNSMVGKSVYFVKEENPNTGCGSCIQRVKTAVWKWYHLDETAPKYNRLVFLKLGAHNIPLYSVTDAN
Ga0307996_10003517	F084717	N/A	VNDLTTIYELFKQFGDGHKMVNEFKLLNSLEDLENIEINHRGLFIALEDANISRQDGSPVYDVNFNIIIVDRVSLDSPLELINSNQENLFVMGQLQDFFIQNLIGEQSFEEVSMRGFSSEDYNITASVSSATFVTGRSPYLKGIDI